rs1050428 chr6:31271766 C>T

Sequence
ggactcgcggcgtcgctgtcgaac[C/T]gcacgaactgcgtgtcgtccacgt
ASB in cell types
HCT-116 (colon carcinoma) pancreas foreskin keratinocyte primary B-CLL cells
ASB for transcription factors
CTCF_HUMAN MBD4_HUMAN RAD21_HUMAN BRD4_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 1.73 0.00 3.1·10-111.00 1.28 n/a No Hit
MBD4_HUMAN 2.16 -0.85 9.4·10-41.00 1.00 n/a n/a
RAD21_HUMAN 1.89 -0.65 3.7·10-31.00 1.00 n/a n/a
BRD4_HUMAN 1.76 n/a 0.041.00 3.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Artery_Tibial,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Hypothalamus,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Spleen,  Testis,  Thyroid,  Whole_Blood

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