rs10504389 chr8:65643952 C>T
- Sequence
gagatccagtgacagcccagcgac[C/T]tccgggatcaattgcaatgggagg
- ASB in cell types
- HepG2 (hepatoblastoma) A549 (lung carcinoma) breast tumor 22RV1 (prostate carcinoma)
- ASB for transcription factors
- ARI4B_HUMAN SP130_HUMAN SIN3A_HUMAN ESR1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ARI4B_HUMAN | -3.13 | 3.17 | 1.00 | n/a | n/a | |||
| SP130_HUMAN | -2.56 | 2.91 | 1.00 | n/a | n/a | |||
| SIN3A_HUMAN | n/a | 3.51 | 2.00 | n/a | n/a | |||
| ESR1_HUMAN | 2.34 | n/a | 2.00 | n/a | No Hit | |||
| ANDR_HUMAN | 1.75 | -0.34 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Vagina, Whole_Blood