rs10508 chr16:3023239 G>T

Sequence
gccagtggaggaacctacctgagt[G/T]ggggcagggctggggagaaggtca
ASB in cell types
HEK293 (embryonic kidney)
ASB for transcription factors
SP2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SP2_HUMAN -1.46 2.50 1.000.05 2.00 -3.37 Discordant
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Motif analysis

SP2_HUMAN Discordant
SP2_HUMAN pic

Genetic associations

GRASP birth weight,  partial epilepsy,  stabilized warfarin dose
GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Brain_Amygdala,  Brain_Anterior_cingulate_cortex_BA24,  Brain_Cerebellum,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Esophagus_Muscularis,  Muscle_Skeletal,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid,  Whole_Blood

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