rs1053329 chr2:73234355 C>A

Sequence
gtctcggagaagaggggagagtgg[C/A]gggccgctgaataagcttccaaaa
ASB in cell types
K562 (myelogenous leukemia) HepG2 (hepatoblastoma) GM12878 (female B-cells lymphoblastoid cell line) fetal bone marrow-derived mononuclear cells
ASB for transcription factors
FOXK2_HUMAN ZFX_HUMAN MNT_HUMAN T2FA_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXK2_HUMAN -0.59 2.92 1.002.5·10-6 1.88 n/a n/a
ZFX_HUMAN -1.23 1.94 1.004.8·10-6 1.25 n/a No Hit
MNT_HUMAN -0.48 1.79 1.001.2·10-3 2.00 n/a n/a
T2FA_HUMAN n/a 3.48 1.002.4·10-3 2.00 n/a n/a
HDAC1_HUMAN 0.43 2.33 1.003.0·10-3 1.83 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP infant head circumference
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Frontal_Cortex_BA9,  Brain_Nucleus_accumbens_basal_ganglia,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Stomach,  Testis,  Thyroid

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