rs1056879 chr14:35121968 T>C
- Sequence
cttctttccagtccatggccgact[T/C]ccgcgcagcagcttctgcatttgc
- ASB in cell types
- CD14+ monocytes liver
- ASB for transcription factors
- ELF1_HUMAN E2F1_HUMAN STAT1_HUMAN SPI1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ELF1_HUMAN | 1.01 | -0.34 | 1.25 | -5.76 | Concordant | |||
| E2F1_HUMAN | -0.96 | 3.09 | 1.00 | 3.33 | Concordant | |||
| STAT1_HUMAN | 2.93 | 0.48 | 1.62 | n/a | No Hit | |||
| SPI1_HUMAN | 1.51 | -0.01 | 2.50 | n/a | No Hit | |||
| ZBT40_HUMAN | 2.44 | 0.90 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood