rs1057192 chr6:116462167 G>A
- Sequence
gcacgcacgtggcgcctgctcacc[G/A]gatgctgctccagcgcccgcgcga
- ASB in cell types
- BEAS-2B (bronchial epithelium) Th1-cells
- ASB for transcription factors
- GCR_HUMAN TBX21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 2.68 | 0.23 | 1.00 | n/a | No Hit | |||
| TBX21_HUMAN | 1.94 | -1.80 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Cortex, Brain_Frontal_Cortex_BA9, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Esophagus_Mucosa, Lung, Muscle_Skeletal, Testis, Whole_Blood