rs10754895 chr1:15508793 G>T

Sequence
agataagcaagctggaagctcaca[G/T]gagtgaatgccagcagctgtgcca
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
NCOR1_HUMAN RING2_HUMAN HTF4_HUMAN ARI1B_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
NCOR1_HUMAN -3.29 3.67 1.006.8·10-8 1.00 n/a n/a
RING2_HUMAN -3.96 3.85 1.004.0·10-6 1.00 n/a n/a
HTF4_HUMAN n/a 3.08 1.001.2·10-5 1.50 n/a No Hit
ARI1B_HUMAN n/a 2.79 1.001.3·10-5 2.00 n/a n/a
MTA2_HUMAN n/a 2.92 1.002.4·10-3 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP adiponectin levels,  serum creatinine,  waist hip ratio
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Frontal_Cortex_BA9,  Brain_Hypothalamus,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Liver,  Lung,  Minor_Salivary_Gland,  Muscle_Skeletal,  Nerve_Tibial,  Ovary,  Pancreas,  Pituitary,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Spleen,  Stomach,  Testis,  Thyroid,  Whole_Blood

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