rs10778647 chr12:108562641 T>G

Sequence
ggcaagatggcggcggctggggct[T/G]tccgtctgaggcgggcggcatcgg
ASB in cell types
K562 (myelogenous leukemia) primary B-CLL cells adult erythroblasts 22RV1 (prostate carcinoma)
ASB for transcription factors
NRF1_HUMAN CREB1_HUMAN ANDR_HUMAN HCFC1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
NRF1_HUMAN 1.13 0.33 3.5·10-41.00 2.06 n/a No Hit
CREB1_HUMAN 1.64 0.04 9.5·10-41.00 1.72 n/a No Hit
ANDR_HUMAN 0.11 2.87 1.001.2·10-3 1.83 n/a No Hit
HCFC1_HUMAN -3.94 2.30 1.001.3·10-3 3.00 n/a n/a
BRD4_HUMAN 1.47 2.33 0.297.5·10-3 1.95 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Esophagus_Mucosa,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Small_Intestine_Terminal_Ileum,  Spleen,  Testis,  Whole_Blood

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