rs10778648 chr12:108562642 T>G

Sequence
gcaagatggcggcggctggggctt[T/G]ccgtctgaggcgggcggcatcggc
ASB in cell types
K562 (myelogenous leukemia) primary B-CLL cells adult erythroblasts 22RV1 (prostate carcinoma)
ASB for transcription factors
NRF1_HUMAN ANDR_HUMAN HCFC1_HUMAN CREB1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
NRF1_HUMAN 1.21 0.21 6.7·10-51.00 2.06 n/a No Hit
ANDR_HUMAN 0.19 3.07 1.007.0·10-4 1.83 n/a No Hit
HCFC1_HUMAN -3.94 2.39 1.009.6·10-4 3.00 n/a n/a
CREB1_HUMAN 1.62 0.06 1.0·10-31.00 1.72 n/a No Hit
BRD4_HUMAN 1.49 2.32 0.386.7·10-3 1.95 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Esophagus_Mucosa,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Small_Intestine_Terminal_Ileum,  Spleen,  Testis,  Whole_Blood

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