rs10779788 chr1:5885930 G>A

Sequence
tttgtgaaaacctctccctctccc[G/A]tcagcgccggagtctcccaggctg
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
MEIS2_HUMAN BRD9_HUMAN PKNX1_HUMAN KDM1A_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
MEIS2_HUMAN 1.48 -1.48 2.1·10-31.00 1.00 n/a No Hit
BRD9_HUMAN 2.98 n/a 6.7·10-31.00 1.00 n/a n/a
PKNX1_HUMAN 2.17 -1.86 9.5·10-31.00 1.00 n/a No Hit
KDM1A_HUMAN 0.82 0.22 0.011.00 1.00 n/a n/a
NR2F6_HUMAN 2.61 -4.69 0.021.00 1.50 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Brain_Anterior_cingulate_cortex_BA24,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Brain_Hippocampus,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Liver,  Lung,  Nerve_Tibial,  Ovary,  Spleen,  Whole_Blood

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