rs10782588 chr1:86982219 C>T

Sequence
gcagaggcccagctgatgatacca[C/T]tgttccttcttaggcctctgggcc
ASB in cell types
HepG2 (hepatoblastoma)
ASB for transcription factors
SOX5_HUMAN SOX13_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SOX5_HUMAN n/a 3.00 1.001.2·10-3 1.00 3.75 Concordant
SOX13_HUMAN -4.37 2.47 1.000.03 1.50 n/a n/a
Items per page:
1 – 2 of 2

Motif analysis

SOX5_HUMAN Concordant
SOX5_HUMAN pic

Genetic associations

GRASP diastolic blood pressure (dbp),  major depressive disorder
GTEx eQTL Adipose_Subcutaneous,  Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Brain_Anterior_cingulate_cortex_BA24,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Hippocampus,  Brain_Hypothalamus,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Brain_Substantia_nigra,  Breast_Mammary_Tissue,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Liver,  Muscle_Skeletal,  Nerve_Tibial,  Pituitary,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Testis,  Thyroid,  Whole_Blood

Download