rs10783613 chr12:53928182 G>T

Sequence
cccgtcccaggctgggagcgtggg[G/T]acttccgtctctggactgtgcaaa
ASB in cell types
TTC-1240 (Rhabdoid tumor of the kidney) BEAS-2B (bronchial epithelium)
ASB for transcription factors
GCR_HUMAN SUZ12_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
GCR_HUMAN 2.27 n/a 0.031.00 1.00 n/a No Hit
SUZ12_HUMAN -0.08 1.97 1.000.05 1.40 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP college completion,  ldl cholesterol,  total cholesterol,  waist hip ratio,  years of education
GTEx eQTL Artery_Tibial,  Cells_Cultured_fibroblasts,  Muscle_Skeletal,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg

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