rs10789092 chr1:61133450 T>G
- Sequence
gcatatgtacactagaatgtttta[T/G]gaggaagggaacttactagtcttg
- ASB in cell types
- LNCaP (prostate carcinoma) LN95(Prostate adenocarcinoma)
- ASB for transcription factors
- FOXA1_HUMAN ANDR_HUMAN HXB13_HUMAN A2NVP9_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.14 | 0.07 | 1.43 | n/a | No Hit | |||
| ANDR_HUMAN | 1.18 | -0.15 | 1.42 | n/a | No Hit | |||
| HXB13_HUMAN | 1.55 | -0.28 | 1.44 | -5.78 | Concordant | |||
| A2NVP9_HUMAN | 1.80 | -0.72 | 1.50 | n/a | n/a |
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Motif analysis
Genetic associations
GRASP bipolar disorder, chronic kidney disease, late onset alzheimers disease, maternal transmission distortion, stabilized warfarin dose, transmission distortion, triglycerides, triglycerides change with statins