rs10789092 chr1:61133450 T>G

Sequence
gcatatgtacactagaatgtttta[T/G]gaggaagggaacttactagtcttg
ASB in cell types
LNCaP (prostate carcinoma) LN95(Prostate adenocarcinoma)
ASB for transcription factors
FOXA1_HUMAN ANDR_HUMAN HXB13_HUMAN A2NVP9_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN 1.14 0.07 8.0·10-211.00 1.43 n/a No Hit
ANDR_HUMAN 1.18 -0.15 2.2·10-161.00 1.42 n/a No Hit
HXB13_HUMAN 1.55 -0.28 2.0·10-31.00 1.44 -5.78 Concordant
A2NVP9_HUMAN 1.80 -0.72 0.011.00 1.50 n/a n/a
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Motif analysis

HXB13_HUMAN Concordant
HXB13_HUMAN pic

Genetic associations

GRASP bipolar disorder,  chronic kidney disease,  late onset alzheimers disease,  maternal transmission distortion,  stabilized warfarin dose,  transmission distortion,  triglycerides,  triglycerides change with statins

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