rs10798922 chr1:32981277 T>G

Sequence
gcctctggcagccttcctccttcc[T/G]atactttctgccaactgctgaggc
ASB in cell types
K562 (myelogenous leukemia) GM01310 ( Transformed lymphovlasoid cell line ) upper lobe of left lung
ASB for transcription factors
ZBT40_HUMAN GABP1_HUMAN ATF7_HUMAN E4F1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ZBT40_HUMAN -2.56 2.96 1.002.3·10-4 1.00 n/a n/a
GABP1_HUMAN -1.67 1.67 1.003.3·10-3 1.00 n/a n/a
ATF7_HUMAN -1.86 2.24 1.008.2·10-3 1.00 n/a n/a
E4F1_HUMAN -1.61 1.87 1.009.5·10-3 1.00 n/a n/a
AHR_HUMAN -0.72 2.09 0.940.01 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP hdl cholesterol,  total cholesterol,  total cholesterol change with statins
GTEx eQTL Adipose_Subcutaneous,  Adrenal_Gland,  Artery_Tibial,  Brain_Cerebellum,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Muscle_Skeletal,  Spleen,  Testis,  Thyroid,  Whole_Blood

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