rs10799313 chr1:225475233 C>G
- Sequence
gcgcccagcggacctgcacgcctg[C/G]ggccttgggacgtgccgcctttcc
- ASB in cell types
- RCC 7860 (Renal cell carcinoma) adult erythroblasts MCF7L-P(immortalized breast epithelial cell line) RCC4 (kidney cancer cell line)
- ASB for transcription factors
- ANDR_HUMAN STAG1_HUMAN KDM6A_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | -0.86 | 2.04 | 2.25 | n/a | No Hit | |||
| STAG1_HUMAN | 0.40 | 0.78 | 1.40 | n/a | n/a | |||
| KDM6A_HUMAN | n/a | 1.34 | 3.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Coronary, Artery_Tibial, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Muscle_Skeletal, Nerve_Tibial, Pancreas, Testis