rs10800118 chr1:165630537 G>C
- Sequence
caggtgttcacatcaaaggtctgg[G/C]tcgcgaaggcagagactccatgtg
- ASB in cell types
- MOLT-4 (Adult T acute lymphoblastic leukemia) LNCaP C4-2B (prostate carcinoma) neural cell K562 (myelogenous leukemia)
- ASB for transcription factors
- ZFX_HUMAN MXI1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZFX_HUMAN | 1.38 | -0.01 | 1.25 | n/a | No Hit | |||
| MXI1_HUMAN | 2.29 | -1.96 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Hippocampus, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Vagina, Whole_Blood