rs10849448 chr12:6384185 A>G
- Sequence
cactcccacttcctgagctccgcc[A/G]tgggagccctggaggcccggcctg
- ASB in cell types
- Kelly (neuroblastoma) macrophages form periferal blood macrophages monocyte-derived dendritic cells
- ASB for transcription factors
- MYCN_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MYCN_HUMAN | 3.30 | n/a | 2.00 | n/a | No Hit | |||
| CTCF_HUMAN | 0.46 | 1.02 | 1.07 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
EMBL-EBI granulocyte percentage of myeloid white cells, juvenile idiopathic arthritis (oligoarticular or rheumatoid factor-negative polyarticular), monocyte percentage of white cells, tonsillectomy
GRASP juvenile idiopathic arthritis (including oligoarticular and rheumatoid factor-negative polyarticular jia)
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Kidney_Cortex, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood