rs10861578 chr12:106345948 C>T
- Sequence
cttggtctctcatcctccagcaag[C/T]ccaggcctattctcatggcggtag
- ASB in cell types
- VCaP (prostate carcinoma) pancreas GM19238 (female B-cells lymphoblastoid cell lines) prostate gland
- ASB for transcription factors
- CTCF_HUMAN P63_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.68 | 1.20 | 1.43 | n/a | No Hit | |||
| P63_HUMAN | -0.74 | 1.62 | 1.17 | 0.01 | Weak Concordant |
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Motif analysis
