rs10880254 chr12:42145045 C>G
- Sequence
ctgagggctatagctagcgcaggc[C/G]gacgcgcaggtgaatgggagccct
- ASB in cell types
- keratinocytes HepG2 (hepatoblastoma) GM12878 (female B-cells lymphoblastoid cell line) BEAS-2B (bronchial epithelium)
- ASB for transcription factors
- SNAI2_HUMAN TYY1_HUMAN GCR_HUMAN ZN687_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SNAI2_HUMAN | 3.01 | n/a | 1.50 | n/a | No Hit | |||
| TYY1_HUMAN | 3.17 | 0.11 | 1.25 | n/a | No Hit | |||
| GCR_HUMAN | -0.04 | 1.18 | 1.00 | n/a | No Hit | |||
| ZN687_HUMAN | 1.77 | -0.21 | 1.25 | n/a | n/a | |||
| STAG1_HUMAN | 0.08 | 1.23 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellum, Brain_Cortex, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid, Whole_Blood