rs10881069 chr12:47188941 C>T
- Sequence
aaatgcccccacatggcattttgc[C/T]ccattttcatttctgcttctgatt
- ASB in cell types
- T47D (invasive ductal carcinoma) breast tumor xenograft K562 (myelogenous leukemia)
- ASB for transcription factors
- ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 1.52 | -0.42 | 2.64 | -3.17 | Concordant |
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Motif analysis
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, advanced age-related macular degeneration (geographic atrophy), prop taste detection threshold, salmonella-induced pyroptosis, variant creutzfeldt-jakob disease
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Breast_Mammary_Tissue, Colon_Sigmoid, Nerve_Tibial, Ovary, Spleen, Testis, Thyroid, Whole_Blood