rs10883992 chr10:104329527 A>C
- Sequence
gtccaaataatgcctgctgaatgc[A/C]tggacccatgactcatatgtgcgt
- ASB in cell types
- A549 (lung carcinoma) MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line) MDA-MB-231 (breast adenocarcinoma) Th1-cells
- ASB for transcription factors
- JUN_HUMAN CDN1B_HUMAN JUNB_HUMAN EP300_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | -0.07 | 1.02 | 2.00 | n/a | No Hit | |||
| CDN1B_HUMAN | -0.00 | 1.77 | 2.00 | n/a | n/a | |||
| JUNB_HUMAN | -1.05 | 1.98 | 2.00 | n/a | No Hit | |||
| EP300_HUMAN | 0.52 | 1.46 | 1.62 | n/a | n/a | |||
| TBX21_HUMAN | 1.41 | -0.95 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Stomach, Testis, Thyroid, Whole_Blood