rs10896247 chr11:67826577 G>A

Sequence
tcgctctgattgcagcggtttccc[G/A]ccagctccttgcagagctggcaga
ASB in cell types
HEK293 (embryonic kidney)
ASB for transcription factors
ZN596_HUMAN ZN629_HUMAN ZBT17_HUMAN ZN660_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ZN596_HUMAN 2.91 -2.61 1.5·10-31.00 1.00 n/a n/a
ZN629_HUMAN 2.87 -2.67 2.1·10-31.00 1.00 n/a n/a
ZBT17_HUMAN 2.77 -2.44 2.9·10-31.00 1.00 -0.73 Weak Concordant
ZN660_HUMAN 3.04 -2.83 3.6·10-31.00 1.00 n/a n/a
ZEB2_HUMAN 2.95 -2.83 3.7·10-31.00 1.00 n/a n/a
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Motif analysis

ZBT17_HUMAN Weak Concordant
ZBT17_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Esophagus_Muscularis,  Lung,  Nerve_Tibial,  Pancreas,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid

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