rs10899121 chr11:75781158 T>C

Sequence
tgactttatcttcaaataggttat[T/C]tctgtgggtggcaagatagcccct
ASB in cell types
definitive endoderm from HUES8
ASB for transcription factors
GATA6_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
GATA6_HUMAN n/a 2.41 1.001.7·10-3 1.00 5.05 Concordant
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Motif analysis

GATA6_HUMAN Concordant
GATA6_HUMAN pic

Genetic associations

GRASP age at death with kuru exposure,  hdl cholesterol,  mitral annular calcium,  serum creatinine,  sporadic creutzfeldt-jakob disease,  total cholesterol,  transmission distortion
GTEx eQTL Artery_Aorta,  Lung,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Whole_Blood

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