rs10899346 chr11:77036581 A>T
- Sequence
ggcaccttgataatcctaacagct[A/T]atatttactgaatactatgtgcca
- ASB in cell types
- HepG2 (hepatoblastoma) VCaP (prostate carcinoma) T47D (invasive ductal carcinoma) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- ANDR_HUMAN FOXA1_HUMAN FOXA3_HUMAN RING2_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 1.32 | 0.15 | 1.40 | n/a | No Hit | |||
| FOXA1_HUMAN | 1.69 | -0.12 | 1.60 | n/a | No Hit | |||
| FOXA3_HUMAN | 2.64 | -4.48 | 1.50 | 0.01 | Weak Discordant | |||
| RING2_HUMAN | 3.09 | -3.23 | 1.00 | n/a | n/a | |||
| FOXP1_HUMAN | 2.06 | -1.54 | 1.25 | n/a | No Hit |
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Motif analysis
