rs10910420 chr1:234373513 G>C

Sequence
agagtccgcggtttcgccgcgtga[G/C]ttgctttttgcggctggggaggtc
ASB in cell types
HEK293 (embryonic kidney) HepG2 (hepatoblastoma) HL-60 (acute myeloid leukemia) GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
RAD51_HUMAN TYY1_HUMAN INT13_HUMAN RBM25_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RAD51_HUMAN 0.85 3.04 1.004.5·10-7 3.00 n/a n/a
TYY1_HUMAN 0.20 1.76 0.857.6·10-6 1.91 n/a No Hit
INT13_HUMAN 0.41 2.42 1.007.9·10-6 1.00 n/a n/a
RBM25_HUMAN 0.15 2.45 1.001.0·10-4 2.00 n/a n/a
ZBTB6_HUMAN n/a 3.09 1.000.03 3.00 n/a No Hit
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Motif analysis

ARNT_HUMAN Weak Concordant
ARNT_HUMAN pic

Genetic associations

GRASP diastolic blood pressure (dbp) ldl cholesterol systolic blood pressure (sbp) total cholesterol triglycerides change with statins
GTEx eQTL Adipose_Subcutaneous Adipose_Visceral_Omentum Adrenal_Gland Artery_Aorta Artery_Coronary Artery_Tibial Brain_Anterior_cingulate_cortex_BA24 Brain_Cerebellar_Hemisphere Brain_Cerebellum Brain_Cortex Brain_Frontal_Cortex_BA9 Brain_Hippocampus Brain_Hypothalamus Brain_Nucleus_accumbens_basal_ganglia Brain_Substantia_nigra Breast_Mammary_Tissue Cells_Cultured_fibroblasts Cells_EBV-transformed_lymphocytes Colon_Sigmoid Colon_Transverse Esophagus_Gastroesophageal_Junction Esophagus_Mucosa Esophagus_Muscularis Heart_Atrial_Appendage Heart_Left_Ventricle Liver Lung Minor_Salivary_Gland Muscle_Skeletal Nerve_Tibial Ovary Pancreas Pituitary Prostate Skin_Not_Sun_Exposed_Suprapubic Skin_Sun_Exposed_Lower_leg Small_Intestine_Terminal_Ileum Spleen Stomach Testis Thyroid Uterus Vagina Whole_Blood

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