rs10913112 chr1:175944692 C>T

Sequence
tctatgtactttatattttgttta[C/T]attgatatgtgtaattcccaaaga
ASB in cell types
LNCaP (prostate carcinoma)
ASB for transcription factors
FOXA1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN 2.61 -0.81 1.4·10-31.00 1.38 -2.78 Concordant
Items per page:
1 – 1 of 1

Motif analysis

FOXA1_HUMAN Concordant
FOXA1_HUMAN pic

Genetic associations

EMBL-EBI depression
GRASP body mass index (bmi),  comorbid depressive syndrome and alcohol dependence,  waist hip ratio
GTEx eQTL Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Cells_Cultured_fibroblasts,  Lung,  Nerve_Tibial,  Spleen,  Thyroid,  Whole_Blood

Download