rs10915962 chr1:226223616 C>T

Sequence
gatcgcaccgccccgccttcccag[C/T]ccctggcccgggagggtataagtg
ASB in cell types
definitive endoderm from HUES8 HEK293T (embryonic kidney)
ASB for transcription factors
SMAD2_HUMAN SP5_HUMAN ZFX_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SMAD2_HUMAN -0.57 2.13 1.003.0·10-4 1.17 n/a No Hit
SP5_HUMAN n/a 2.59 1.000.03 1.00 n/a n/a
ZFX_HUMAN -1.66 2.21 1.000.04 2.25 n/a No Hit
Items per page:
1 – 3 of 3

Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Brain_Anterior_cingulate_cortex_BA24,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Liver,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Stomach,  Testis,  Thyroid,  Whole_Blood

Download