rs10921310 chr1:193105521 T>A
- Sequence
cccgcgccgccgccggtcacctcc[T/A]cgcagctgagcgcgtcctcccagg
- ASB in cell types
- HCT-116 (colon carcinoma) K562 (myelogenous leukemia) HepG2 (hepatoblastoma) neutrophils
- ASB for transcription factors
- MED26_HUMAN SP1_HUMAN NFIC_HUMAN PO2F1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MED26_HUMAN | -1.45 | 2.27 | 1.00 | n/a | n/a | |||
| SP1_HUMAN | 0.38 | 1.71 | 1.22 | -2.66 | Discordant | |||
| NFIC_HUMAN | n/a | 2.52 | 3.00 | n/a | No Hit | |||
| PO2F1_HUMAN | -2.47 | 2.78 | 1.00 | n/a | No Hit | |||
| MAX_HUMAN | 0.37 | 1.81 | 1.38 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Cells_Cultured_fibroblasts, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Pituitary, Small_Intestine_Terminal_Ileum, Spleen