rs10931898 chr2:200306468 C>G
- Sequence
ctagaaagtggggtgggaaaggag[C/G]tagggagggcgtgtggagggacga
- ASB in cell types
- HepG2 (hepatoblastoma) GM12878 (female B-cells lymphoblastoid cell line) HEK293 (embryonic kidney) GM12890 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- PKNX1_HUMAN FOXK2_HUMAN KLF1_HUMAN IKZF2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PKNX1_HUMAN | -0.43 | 1.71 | 1.50 | n/a | No Hit | |||
| FOXK2_HUMAN | -1.11 | 1.91 | 1.75 | n/a | n/a | |||
| KLF1_HUMAN | -1.68 | 2.01 | 1.00 | n/a | No Hit | |||
| IKZF2_HUMAN | -0.67 | 1.42 | 1.00 | n/a | n/a | |||
| CTCF_HUMAN | 0.09 | 1.22 | 1.27 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cortex, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood