rs10948172 chr6:44809954 A>G

Sequence
aggcaagagttacgaatagatata[A/G]tttcttagtgccagatccacggag
ASB in cell types
22RV1 (prostate carcinoma)
ASB for transcription factors
ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 1.92 -1.19 0.041.00 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

EMBL-EBI osteoarthritis,  osteoarthritis (hip),  osteoarthritis of the hip or knee
GRASP hip osteoarthritis,  hip osteoarthritis (females),  hip osteoarthritis (males),  knee osteoarthritis,  knee osteoarthritis (males),  osteoarthritis (females),  osteoarthritis (males)
GTEx eQTL Brain_Anterior_cingulate_cortex_BA24,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Hypothalamus,  Brain_Nucleus_accumbens_basal_ganglia,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Lung,  Nerve_Tibial,  Pituitary,  Spleen,  Testis

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