rs10954667 chr7:75843049 A>T
- Sequence
gaagtggagatcaacagtaacaac[A/T]atgtatatttctaaacagaacagt
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) K562 (myelogenous leukemia) A549 (lung carcinoma)
- ASB for transcription factors
- MEF2B_HUMAN IKZF2_HUMAN FOXA2_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MEF2B_HUMAN | 2.31 | -2.03 | 1.00 | n/a | No Hit | |||
| IKZF2_HUMAN | 1.13 | -0.92 | 1.00 | n/a | n/a | |||
| FOXA2_HUMAN | -0.07 | 1.29 | 1.15 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Cells_Cultured_fibroblasts, Heart_Atrial_Appendage, Lung, Nerve_Tibial, Ovary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen