rs11000015 chr10:71812126 C>T
- Sequence
ggctgccgaaacccaggctgtggg[C/T]gccccctggtgggcgggccaccct
- ASB in cell types
- K562 (myelogenous leukemia) Kelly (neuroblastoma) foreskin keratinocyte PANC1 (pancreatic ductal adenocarcinoma)
- ASB for transcription factors
- CTCF_HUMAN CTCFL_HUMAN LMBL2_HUMAN OLIG2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.23 | 0.22 | 1.56 | -1.01 | Weak Concordant | |||
| CTCFL_HUMAN | 2.03 | -0.68 | 1.00 | -3.92 | Concordant | |||
| LMBL2_HUMAN | 2.20 | -1.93 | 1.00 | n/a | n/a | |||
| OLIG2_HUMAN | 2.47 | n/a | 1.00 | n/a | No Hit | |||
| IKZF1_HUMAN | 1.29 | -0.55 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Nerve_Tibial, Pancreas, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Thyroid, Whole_Blood