rs11025543 chr11:20387412 C>A

Sequence
gcctgccgcaacccaaggaggaga[C/A]aaaagtcatcttccgggctgcaac
ASB in cell types
HEK293 (embryonic kidney) CD34+ hematopoietic stem cells HEK293T (embryonic kidney) MM1.S (plasma cell myeloma)
ASB for transcription factors
ZN362_HUMAN TIF1B_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ZN362_HUMAN -3.11 3.49 1.005.4·10-6 1.00 n/a n/a
TIF1B_HUMAN 2.63 0.45 1.9·10-30.95 1.33 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Brain_Amygdala,  Brain_Cortex,  Brain_Hypothalamus,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Ovary,  Pancreas,  Uterus,  Whole_Blood

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