rs11025544 chr11:20387462 C>G

Sequence
ttaaccgtcatcagcgcgcctctt[C/G]agcgcgcactgcgccaaccctgcg
ASB in cell types
HEK293 (embryonic kidney) neutrophils from periferal blood CD14+ monocytes
ASB for transcription factors
ZN362_HUMAN STAT1_HUMAN RAD21_HUMAN ZFHX2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ZN362_HUMAN -2.63 3.01 1.001.7·10-3 1.00 n/a n/a
STAT1_HUMAN 0.09 1.58 1.006.4·10-3 1.67 n/a No Hit
RAD21_HUMAN 2.13 0.87 0.031.00 1.15 n/a n/a
ZFHX2_HUMAN 1.95 -1.65 0.031.00 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Cortex,  Brain_Hippocampus,  Brain_Hypothalamus,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Uterus,  Whole_Blood

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