rs11065636 chr12:110421296 T>C

Sequence
acagctcactgcaacctctacctt[T/C]cgggctcaagagataatcccacct
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
ARI1B_HUMAN HTF4_HUMAN SMCA4_HUMAN HDAC1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ARI1B_HUMAN n/a 2.14 1.001.1·10-8 6.00 n/a n/a
HTF4_HUMAN n/a 4.39 1.009.4·10-7 2.00 n/a No Hit
SMCA4_HUMAN n/a 3.84 1.005.4·10-6 2.00 n/a n/a
HDAC1_HUMAN n/a 3.46 1.006.9·10-6 4.67 n/a n/a
RING2_HUMAN n/a 3.35 1.007.0·10-6 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Brain_Putamen_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid,  Whole_Blood

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