rs1107479 chr12:56636902 C>T
- Sequence
gagaggctgctgccaaggacgtca[C/T]aggcagatggaaggaagcttagag
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) GM12878 (female B-cells lymphoblastoid cell line) CD34+ stem cells-derived erythroblasts
- ASB for transcription factors
- ENL_HUMAN PBX2_HUMAN ATF7_HUMAN TYY1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ENL_HUMAN | -0.50 | 1.98 | 1.67 | n/a | n/a | |||
| PBX2_HUMAN | -1.74 | 2.67 | 2.00 | n/a | No Hit | |||
| ATF7_HUMAN | -0.91 | 1.01 | 1.50 | n/a | n/a | |||
| TYY1_HUMAN | 0.15 | 1.92 | 1.83 | n/a | No Hit | |||
| GLIS2_HUMAN | 2.01 | n/a | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, diastolic blood pressure (dbp)
GTEx eQTL Artery_Tibial, Brain_Caudate_basal_ganglia, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Left_Ventricle, Testis