rs1108015 chr19:14775972 T>C

Sequence
acacaccacaaccgccgccagccc[T/C]ggcggcccatcctgaaacccagtg
ASB in cell types
SEM (childhood B acute lymphoblastic leukemia) NALM-6 (adult B acute lymphoblastic leukemia)
ASB for transcription factors
ERG_HUMAN RUNX2_HUMAN RUNX1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ERG_HUMAN 2.05 0.51 1.9·10-101.00 1.17 n/a No Hit
RUNX2_HUMAN 2.89 -4.29 4.1·10-41.00 1.33 n/a No Hit
RUNX1_HUMAN 2.19 n/a 0.021.00 1.50 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Esophagus_Gastroesophageal_Junction,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Pituitary,  Skin_Sun_Exposed_Lower_leg,  Whole_Blood

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