rs11105294 chr12:89465062 G>A
- Sequence
agtgcaattgaactctaattccac[G/A]atgaagaaaagtcagtgtttaata
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) MDA-MB-134 (invasive lobular breast carcinoma) breast tumor MCF7 TamR (invasive ductal breast carcinoma Tamoxifen resistant)
- ASB for transcription factors
- ESR1_HUMAN FOXA1_HUMAN GRHL2_HUMAN NCOA3_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 0.84 | 1.62 | 2.16 | n/a | No Hit | |||
| FOXA1_HUMAN | 0.86 | 1.43 | 2.20 | n/a | No Hit | |||
| GRHL2_HUMAN | -0.82 | 1.52 | 2.50 | n/a | No Hit | |||
| NCOA3_HUMAN | -1.50 | 2.24 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Tibial, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Testis, Thyroid