rs11121820 chr1:11749345 T>G

Sequence
agatgagatgccccacgtggcctg[T/G]gactgccaccagctggttgagggt
ASB in cell types
GM17942 (lymphoblastoid cell) epithelial cell of prostate SK-N-SH (neuroblastoma) Peyer's patch
ASB for transcription factors
CTCF_HUMAN RAD21_HUMAN STAG2_HUMAN TBX21_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 2.56 0.39 3.6·10-1781.00 1.64 n/a No Hit
RAD21_HUMAN 1.53 0.69 2.7·10-101.00 1.93 n/a n/a
STAG2_HUMAN 2.41 -3.02 1.7·10-41.00 1.00 n/a n/a
TBX21_HUMAN 2.46 -3.68 4.6·10-41.00 1.50 n/a No Hit
STAG1_HUMAN 1.42 n/a 2.1·10-31.00 3.35 n/a n/a
Items per page:
1 – 5 of 7

Motif analysis

No data available

Genetic associations

GRASP homa-ir,  microalbuminuria,  mitral annular calcium
GTEx eQTL Artery_Tibial,  Brain_Spinal_cord_cervical_c-1,  Esophagus_Mucosa,  Heart_Left_Ventricle,  Muscle_Skeletal,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Whole_Blood

Download