rs11122107 chr1:5893727 G>A
- Sequence
gcagagtcttctctaaactccccc[G/A]gggaaagagagactccctttcccg
- ASB in cell types
- K562 (myelogenous leukemia) HCT-116 (colon carcinoma)
- ASB for transcription factors
- ILF3_HUMAN RAD21_HUMAN KDM1A_HUMAN CTBP1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ILF3_HUMAN | 2.42 | -2.58 | 1.00 | n/a | n/a | |||
| RAD21_HUMAN | 2.19 | -0.11 | 1.00 | n/a | n/a | |||
| KDM1A_HUMAN | 2.36 | -0.67 | 1.00 | n/a | n/a | |||
| CTBP1_HUMAN | 2.61 | -2.35 | 1.00 | n/a | n/a | |||
| RFX1_HUMAN | 2.33 | -1.93 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Spleen, Stomach, Thyroid, Whole_Blood