rs11157420 chr14:22122628 T>A
- Sequence
ccttaacactgctttctccaagtt[T/A]cacttccctaatcatctcttacct
- ASB in cell types
- GM02610 (Lymphoblastoid Cell Lines) GM12878 (female B-cells lymphoblastoid cell line) monocyte-derived dendritic cells GM19239 (male B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN SPI1_HUMAN IKZF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.98 | 1.29 | 1.11 | n/a | No Hit | |||
| SPI1_HUMAN | 2.27 | -0.87 | 2.00 | -1.62 | Weak Concordant | |||
| IKZF1_HUMAN | 2.20 | -1.95 | 1.25 | n/a | No Hit |
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Motif analysis
