rs11158159 chr14:57390444 G>C

Sequence
agcacgcggccttccccgcagccc[G/C]caggagacacctttgtccccgccc
ASB in cell types
CTV-1 (Adult T acute lymphoblastic leukemia) Th1-cells tibial nerve primary B-CLL cells
ASB for transcription factors
TBX21_HUMAN SMCA4_HUMAN BRD4_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TBX21_HUMAN 2.29 -0.07 0.011.00 1.00 n/a No Hit
SMCA4_HUMAN 1.19 -0.54 0.011.00 1.00 n/a n/a
BRD4_HUMAN 1.52 -1.47 0.041.00 3.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Esophagus_Mucosa,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Whole_Blood

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