rs11166485 chr1:100583249 G>C
- Sequence
catgggattttgaacttgagcaaa[G/C]agagggggattgtgggttctggga
- ASB in cell types
- HepG2 (hepatoblastoma)
- ASB for transcription factors
- FOXA2_HUMAN FOXA3_HUMAN SOX13_HUMAN EP300_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA2_HUMAN | -4.13 | 2.81 | 1.33 | 5.50 | Concordant | |||
| FOXA3_HUMAN | -3.08 | 2.96 | 1.00 | 3.95 | Concordant | |||
| SOX13_HUMAN | -3.97 | 2.21 | 1.50 | n/a | n/a | |||
| EP300_HUMAN | -2.22 | 2.19 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Heart_Atrial_Appendage, Liver, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood