rs11170558 chr12:53441251 G>T
- Sequence
attgagagagggaatcctgggaga[G/T]attatgaaatctctgtatcttccg
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) BEAS-2B (bronchial epithelium) macrophages CD14+ monocytes
- ASB for transcription factors
- GCR_HUMAN MNT_HUMAN STAT1_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | -0.10 | 1.97 | 1.00 | n/a | No Hit | |||
| MNT_HUMAN | n/a | 2.84 | 1.00 | n/a | n/a | |||
| STAT1_HUMAN | 3.02 | n/a | 3.00 | n/a | No Hit | |||
| ANDR_HUMAN | 3.00 | 0.19 | 2.00 | n/a | No Hit | |||
| BRD4_HUMAN | 0.63 | 2.05 | 1.10 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Vagina, Whole_Blood