rs11176961 chr12:40511351 C>T
- Sequence
gcactatcacctactgccatctct[C/T]gagcatatttattttacttcttgt
- ASB in cell types
- GM19239 (male B-cells lymphoblastoid cell line) GM19099 (female B-cells Lymphoblastoid Cell Lines) 2588 (Lymphoblastoid Cell Lines) GM18526 (B – cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- STAG1_HUMAN CTCF_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | 2.13 | 0.88 | 1.07 | n/a | n/a | |||
| CTCF_HUMAN | 1.66 | 0.10 | 1.28 | 0.96 | Weak Discordant |
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Motif analysis
