rs11203034 chr10:80463535 C>T

Sequence
ctgatttttactctgagaatttat[C/T]ccaggattgttccattttagcaca
ASB in cell types
MDM(monocyte derived macrophages) GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
SPI1_HUMAN FOXK2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SPI1_HUMAN 1.59 0.41 0.011.00 1.49 n/a No Hit
FOXK2_HUMAN 2.32 -1.95 0.031.00 1.50 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP birth weight,  hdl cholesterol,  ldl cholesterol,  rheumatoid arthritis,  total cholesterol
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Mucosa,  Liver,  Lung,  Minor_Salivary_Gland,  Nerve_Tibial,  Pancreas,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Testis,  Thyroid,  Whole_Blood

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