rs11210773 chr1:42982911 G>A

Sequence
gacagcttgttatctgaactatgc[G/A]tagacttgaataatctatttttgt
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
NCOR1_HUMAN HTF4_HUMAN TAL1_HUMAN NFIC_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
NCOR1_HUMAN -1.93 2.86 1.006.2·10-6 1.00 n/a n/a
HTF4_HUMAN -2.52 2.42 1.007.5·10-4 1.25 n/a No Hit
TAL1_HUMAN -3.21 2.02 1.004.4·10-3 1.33 1.75 Weak Concordant
NFIC_HUMAN -2.23 2.61 1.006.7·10-3 1.00 n/a No Hit
HDAC2_HUMAN -1.00 2.00 1.000.01 1.00 n/a n/a
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Motif analysis

TAL1_HUMAN Weak Concordant
TAL1_HUMAN pic

Genetic associations

GTEx eQTL Brain_Caudate_basal_ganglia,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Brain_Spinal_cord_cervical_c-1,  Esophagus_Gastroesophageal_Junction,  Pituitary,  Skin_Sun_Exposed_Lower_leg,  Thyroid

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