rs11211031 chr1:44775441 T>C
- Sequence
ggtcagcagcctgcgagaccctcc[T/C]aggctcgtggccctaggcgcggca
- ASB in cell types
- HEK293 (embryonic kidney) RCC4 (kidney cancer cell line) HeLa (cervical adenocarcinoma) MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line)
- ASB for transcription factors
- INT11_HUMAN BRD4_HUMAN HIF1A_HUMAN SNIP1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| INT11_HUMAN | 0.65 | 2.02 | 1.71 | n/a | n/a | |||
| BRD4_HUMAN | 0.89 | 0.27 | 1.41 | n/a | n/a | |||
| HIF1A_HUMAN | 1.60 | -0.04 | 1.25 | n/a | No Hit | |||
| SNIP1_HUMAN | 2.69 | -4.93 | 2.00 | n/a | n/a |
Items per page:
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood