rs11220141 chr11:125592747 G>A

Sequence
aatcgcggcccggtttacgcctcc[G/A]gatttgacagacagttccgagacc
ASB in cell types
neural cell WA01 (H1, human embryonic stem cells) adult erythroblasts
ASB for transcription factors
NC2A_HUMAN RBBP5_HUMAN SMC3_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
NC2A_HUMAN -2.79 3.10 1.004.3·10-4 1.00 n/a n/a
RBBP5_HUMAN 2.21 n/a 0.031.00 2.50 n/a n/a
SMC3_HUMAN 2.33 -1.93 0.031.00 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP 2 hour glucose,  college completion,  years of education
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Brain_Hippocampus,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Esophagus_Muscularis,  Lung,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid

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