rs112224416 chr1:157496236 A>G
- Sequence
tcagccacgcatagtgtcagtgac[A/G]cctagtggttcaagcaagaactgc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) HEK293 (embryonic kidney) FT282 (normal human fallopian tube tissue) HCT-116-RAD21-mAC
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN RAD21_HUMAN NR2C1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.38 | 0.42 | 1.29 | -2.99 | Concordant | |||
| STAG1_HUMAN | 0.91 | -0.31 | 1.00 | n/a | n/a | |||
| RAD21_HUMAN | 1.17 | 0.28 | 1.06 | n/a | n/a | |||
| NR2C1_HUMAN | 2.24 | -1.91 | 1.00 | n/a | No Hit |
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Motif analysis
